### A comprehensive overview of some of the science being done on Latch today.

#### Assays

- **Computational Methods**
- **Tools**
- **Data Accessibility**
- **Visualizations & Apps**

#### Custom Apps
Host Interactive Apps & Dashboards on Latch; RShiny, Ploty Dash, and most other frameworks are supported

#### Jupyter Labs
Create scalable cloud compute pods preinstalled with a Jupyter Labs environment

#### RStudio
Create scalable cloud compute pods preinstalled with an RStudio environment

#### IGV: Integrative Genomics Viewer
Visualize your alignment and genome files on Latch with a single click

#### Plotting
Create interactive Volcano, Bar, PCA, Scatter, and Heat Map plots

#### TSNE & UMAP
Perform dimensionality reduction on single cell count data using Serat or Scanpy

#### SRA/GEO Data Import
Import read files and study metadata from the Gene Expression Omnibus (GEO) or NCBI Sequence Read Archive (SRA) right into your Latch Workspace

#### Cloud Storage Bucket Mount
Mount any AWS S3 Bucket onto your workspace and interact with files as if they were uploaded directly

#### BaseSpace Import
Connect your Illumina BaseSpace account and manually or automatically import your Runs & Projects

#### FTP Data Import
Import data stored on an FTP server directly into your workspace

#### Benchling Data Sync
Connect your Benchling account and import your schemas, entities and inventory data

#### Excel & Google Sheets
Import your Excel, Google Sheets and other tabular data into a tabular registry

#### AlphaFold2 & ColabFold
Easily run batches of Alphafold or ColabFold2 to predict protein structures from amino-acid sequences

#### DESeq2
Use a verified DESeq2 workflow to run differential expression analysis and interpret the results in an interactive report

#### MAGeCK
Run end-to-end MAGeCK through a UI to identify important genes in CRISPR-Cas9 knockout screens

#### Seurat & Scanpy
Interpret your single cell data using Seurat or Scanpy; perform clustering, dimensionality reduction, and differential expression analysis

#### RFDiffusion
Spin up a preconfigured compute environment to run RFDiffusion for generative protein design

#### DNAChisel
Access DNAChisel to optimize DNA sequences using custom or pre-configured settings

### Other Tools
- salmon
- STAR
- kbtools
- RosettaFoldNA
- PIPseeker
- memtool
- Trim Galore!
- Ampliseq
- FastQC
- MethylKit
- MultiQC
- Bowtie2
- Rnafusion
- allevin-fry
- GATK
- RSEM
- DADA2
- LeafCutter
- Qiime2
- BedTools
- Dorado
- BLAST
- Viralrecon
- cutadapt
- BWA
- samtools
- Cell Ranger
- CRISPresso2
- DeepVariant
- vcftools

#### Sequence Alignment
Conduct pairwise or multiple sequence alignment to identify similarities and evolutionary relationships

#### Differential Expression Analyses
Use a verified DESeq2 workflow to run DE analysis and interpret the results in an interactive report

#### Pathway Analyses
Run GSEA and find top 20 pathways using mSigDB, KEGG, and GO pathway databases

#### Clinical Data Analysis
Analyze clinical data and electronic health records to support healthcare decisions

#### De Novo Assembly
Construct a genome sequence from scratch using overlapping DNA sequencing reads

#### Variant Calling
Detect genetic differences by comparing sequencing data to a reference genome

### Additional Functionalities
- Cell Labeling
- Longitudinal Analysis
- Plasmid Assembly
- Basecalling
- Dimensionality Reduction
- Plasmid Analysis
- Protein Docking
- Phylogenetic Analysis
- Sequence Assembly
- Clustering Analysis
- Clone Sequence Verification
- Multi-omics
- High-Content Imaging
- Cell-Based Assays
- Spatial Biology
- Next Generation Sequencing (NGS)
- IND-Enabling Studies
- Bulk RNA-Seq Analysis
- Flow Cytometry
- Protein Structure Prediction

### NGS Solutions Providers
Learn how you can use Latch to sell services, kits, and assays faster by giving your customers a world-class experience.

### How AtlasXomics uses Latch to deliver spatial epigenetics results to customers

### Assays
Capture, process and visualize data to answer key biological questions from common assays

### Multiple Experiments
Integrate multiple experiment types in complex scientific campaigns

### Request a Demo
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