A comprehensive overview of some of the science being done on Latch today.
Assays
- Computational Methods
- Tools
- Data Accessibility
- Visualizations & Apps
Custom Apps
Host Interactive Apps & Dashboards on Latch; RShiny, Ploty Dash, and most other frameworks are supported
Jupyter Labs
Create scalable cloud compute pods preinstalled with a Jupyter Labs environment
RStudio
Create scalable cloud compute pods preinstalled with an RStudio environment
IGV: Integrative Genomics Viewer
Visualize your alignment and genome files on Latch with a single click
Plotting
Create interactive Volcano, Bar, PCA, Scatter, and Heat Map plots
TSNE & UMAP
Perform dimensionality reduction on single cell count data using Serat or Scanpy
SRA/GEO Data Import
Import read files and study metadata from the Gene Expression Omnibus (GEO) or NCBI Sequence Read Archive (SRA) right into your Latch Workspace
Cloud Storage Bucket Mount
Mount any AWS S3 Bucket onto your workspace and interact with files as if they were uploaded directly
BaseSpace Import
Connect your Illumina BaseSpace account and manually or automatically import your Runs & Projects
FTP Data Import
Import data stored on an FTP server directly into your workspace
Benchling Data Sync
Connect your Benchling account and import your schemas, entities and inventory data
Excel & Google Sheets
Import your Excel, Google Sheets and other tabular data into a tabular registry
AlphaFold2 & ColabFold
Easily run batches of Alphafold or ColabFold2 to predict protein structures from amino-acid sequences
DESeq2
Use a verified DESeq2 workflow to run differential expression analysis and interpret the results in an interactive report
MAGeCK
Run end-to-end MAGeCK through a UI to identify important genes in CRISPR-Cas9 knockout screens
Seurat & Scanpy
Interpret your single cell data using Seurat or Scanpy; perform clustering, dimensionality reduction, and differential expression analysis
RFDiffusion
Spin up a preconfigured compute environment to run RFDiffusion for generative protein design
DNAChisel
Access DNAChisel to optimize DNA sequences using custom or pre-configured settings
Other Tools
- salmon
- STAR
- kbtools
- RosettaFoldNA
- PIPseeker
- memtool
- Trim Galore!
- Ampliseq
- FastQC
- MethylKit
- MultiQC
- Bowtie2
- Rnafusion
- allevin-fry
- GATK
- RSEM
- DADA2
- LeafCutter
- Qiime2
- BedTools
- Dorado
- BLAST
- Viralrecon
- cutadapt
- BWA
- samtools
- Cell Ranger
- CRISPresso2
- DeepVariant
- vcftools
Sequence Alignment
Conduct pairwise or multiple sequence alignment to identify similarities and evolutionary relationships
Differential Expression Analyses
Use a verified DESeq2 workflow to run DE analysis and interpret the results in an interactive report
Pathway Analyses
Run GSEA and find top 20 pathways using mSigDB, KEGG, and GO pathway databases
Clinical Data Analysis
Analyze clinical data and electronic health records to support healthcare decisions
De Novo Assembly
Construct a genome sequence from scratch using overlapping DNA sequencing reads
Variant Calling
Detect genetic differences by comparing sequencing data to a reference genome
Additional Functionalities
- Cell Labeling
- Longitudinal Analysis
- Plasmid Assembly
- Basecalling
- Dimensionality Reduction
- Plasmid Analysis
- Protein Docking
- Phylogenetic Analysis
- Sequence Assembly
- Clustering Analysis
- Clone Sequence Verification
- Multi-omics
- High-Content Imaging
- Cell-Based Assays
- Spatial Biology
- Next Generation Sequencing (NGS)
- IND-Enabling Studies
- Bulk RNA-Seq Analysis
- Flow Cytometry
- Protein Structure Prediction
NGS Solutions Providers
Learn how you can use Latch to sell services, kits, and assays faster by giving your customers a world-class experience.
How AtlasXomics uses Latch to deliver spatial epigenetics results to customers
Assays
Capture, process and visualize data to answer key biological questions from common assays
Multiple Experiments
Integrate multiple experiment types in complex scientific campaigns
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